inferelator
v0.6.0
Workflows
Model Selection & Regression Modules
Result Objects
Inferelator Tutorial
Examples
References
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inferelator
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__init__() (inferelator.crossvalidation_workflow.CrossValidationManager method)
A
add_gridsearch_parameter() (inferelator.crossvalidation_workflow.CrossValidationManager method)
add_grouping_dropin() (inferelator.crossvalidation_workflow.CrossValidationManager method)
add_grouping_dropout() (inferelator.crossvalidation_workflow.CrossValidationManager method)
add_preprocess_step() (inferelator.single_cell_workflow.SingleCellWorkflow method)
add_size_subsampling() (inferelator.crossvalidation_workflow.CrossValidationManager method)
AMUSRRegressionWorkflowMixin (class in inferelator.regression.amusr_regression)
append_to_path() (inferelator.workflow.WorkflowBaseLoader method)
B
BBSRRegressionWorkflowMixin (class in inferelator.regression.bbsr_python)
betas_sign (inferelator.postprocessing.InferelatorResults attribute)
betas_stack (inferelator.postprocessing.InferelatorResults attribute)
C
combined_confidences (inferelator.postprocessing.InferelatorResults attribute)
create_task() (inferelator.amusr_workflow.MultitaskLearningWorkflow method)
CrossValidationManager (class in inferelator.crossvalidation_workflow)
E
ElasticNetWorkflowMixin (class in inferelator.regression.elasticnet_python)
I
inferelator.amusr_workflow (module)
inferelator.crossvalidation_workflow (module)
inferelator.single_cell_workflow (module)
inferelator.tfa_workflow (module)
inferelator.workflow (module)
inferelator_workflow() (in module inferelator.workflow)
InferelatorResults (class in inferelator.postprocessing)
M
MultitaskLearningWorkflow (class in inferelator.amusr_workflow)
N
name (inferelator.postprocessing.InferelatorResults attribute)
network (inferelator.postprocessing.InferelatorResults attribute)
P
print_file_loading_arguments() (inferelator.workflow.WorkflowBaseLoader method)
R
run() (inferelator.single_cell_workflow.SingleCellWorkflow method)
(inferelator.tfa_workflow.TFAWorkFlow method)
(inferelator.workflow.WorkflowBase method)
S
set_count_minimum() (inferelator.single_cell_workflow.SingleCellWorkflow method)
set_crossvalidation_parameters() (inferelator.workflow.WorkflowBase method)
set_design_settings() (inferelator.tfa_workflow.TFAWorkFlow method)
set_expression_file() (inferelator.workflow.WorkflowBaseLoader method)
set_file_loading_arguments() (inferelator.workflow.WorkflowBaseLoader method)
set_file_paths() (inferelator.workflow.WorkflowBaseLoader method)
set_file_properties() (inferelator.workflow.WorkflowBaseLoader method)
set_network_data_flags() (inferelator.workflow.WorkflowBaseLoader method)
set_output_file_names() (inferelator.workflow.WorkflowBase static method)
set_postprocessing_parameters() (inferelator.workflow.WorkflowBase method)
set_regression_parameters() (inferelator.regression.amusr_regression.AMUSRRegressionWorkflowMixin method)
(inferelator.regression.bbsr_python.BBSRRegressionWorkflowMixin method)
(inferelator.regression.elasticnet_python.ElasticNetWorkflowMixin method)
(inferelator.regression.sklearn_regression.SKLearnWorkflowMixin method)
(inferelator.regression.stability_selection.StARSWorkflowMixin method)
set_run_parameters() (inferelator.workflow.WorkflowBase method)
set_shuffle_parameters() (inferelator.workflow.WorkflowBase method)
set_task_filters() (inferelator.amusr_workflow.MultitaskLearningWorkflow method)
set_tfa() (inferelator.tfa_workflow.TFAWorkFlow method)
SingleCellWorkflow (class in inferelator.single_cell_workflow)
SKLearnWorkflowMixin (class in inferelator.regression.sklearn_regression)
StARSWorkflowMixin (class in inferelator.regression.stability_selection)
T
tasks (inferelator.postprocessing.InferelatorResults attribute)
TFAWorkFlow (class in inferelator.tfa_workflow)
W
WorkflowBase (class in inferelator.workflow)
WorkflowBaseLoader (class in inferelator.workflow)
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